Steven Zahm@ Taskbucket
This is the correct location, apologies for the delay.
The theme layout issue is an easy fix. Please refer to this FAQ, especially the section about the code and pre HTML tags.
The issue with the content tray and the category is being caused, by the theme, I think. I say that because, reading the code, it seems it is for slider controls and that is usually built into the theme. However, if it isn’t and you have slider plugins installed, try deactivating all of them to see if the issue resolves itself.
This fatal error in this javascript is potentially causing every javascript after it to fail, which includes the javascript for Connections. This error and others exist on all page of the site [at least the pages I visited]. You can view this for yourself by loading your site up in Chrome, hitting the F12 key and then clicking the Console tab. The error that I’m speaking will show in this window.
If you had slider plugins and deactivating them did not work, then the issue is likely with the theme and you you’ll have to contact the theme author to fix.
I hope this helps.
One last question, is this your theme?