[Steven Zahm]

@ Scott

Yeah, I see the issue. You are using this plugin, right?

https://wordpress.org/plugins/bu-navigation/

Connections includes code that deals with how WP creates permalinks for page, but if a plugin rolls their own code to output page links rather than relying on itnal WP functions, then the filter that mods the permalink will not be removed in the menus like it should be. After you confirm that you are using this plugin, I’ll dig into its code to see if there is a hook in it that I can add to remove the permalink filter like I do with the core WP menus.